1. Improve the findability of your ITCR software or projects

   • • • ITN is working on resources to help people find out more about ITCR

2. Enhance usage of your software by discussing, reviewing, or writing an ITN Course

   • • • ITN courses prepare researchers with fundamental information

       • Casual and small contributions are welcome! such as paragraphs, sections, or chapters

       • Trainees are also welcome to participate!

3. Showcase your software at an event

   • • •  ITN is sponsoring workshops and talks by ITCR participants at conferences and events

4. Create content about your software

   • • • ITN has created publishing tools to help you create documentation, courses, or lab onboarding materials

Did you create a tool that allows others access to computing resources?

Did you create a cancer-relevant database?

Please check here to see if the resource is described appropriately or if it is missing - provide feedback at the form on the website.

Email cwright2@fredhutch.org with questions.

Does your lab specialize in genomic data analysis? We can use your help with the upcoming Choosing Genomics Tools course. 

Are you an expert in single cell RNA-seq? We can use your help to fine tune our advice regarding scRNA-seq tool decisions and advice! 

Interested individuals can leave comments at this document version of the course. Please let us know who you are so we can give you credit for reviewing!

Email csavonen@fredhutch.org with questions.

Does your lab specialize in any of the histological imaging data analysis? We can use your help with the upcoming Cancer Imaging Course. You could write a chapter or a section about a relevant topic:

• Basics of Histology/Pathology & Digital Pathology

• Basics of Microscopy

• Whole Slide Imaging

• Basics of Immunohistochemistry, immunofluorescence, and  multispectral imaging

• Basics on ML for Classification

• Methods:

  • Tumor Heterogeneity/Diversity 

  • tissue/cell Segmentation

  • Quantification Methods

• Specialized Tools

If you a postdoc or grad student looking for some more writing experience? Small stipends available to write chapters for this ITCR course content. Researchers are also welcome to contribute writing as well.

Interested individuals can email cwright2@fredhutch.org about contributing.

Does your lab have a tool that is focused on a particular data type? Help us highlight your tool in the upcoming Choosing Genomics Tools course , Cancer Imaging Course, or Cancer Clinical Informatics Course. 

 Write 5 - 10 sentences - including any relevant links that tell: 

• Your name or who to attribute blurb about the tool to?

• What kind of data is used by your tool?

• At what point in the processing of the data is your tool useful for? 

• For what purpose (pre-processing, normalization, visualization, etc.)?

• Where would one go to get started with your tool?

• What makes your tool different than comparable tools?

• Link to documentation/tutorials?

We will incorporate your tool in a course and give you credit for your contribution. 

Email cwright2@fredhutch.org with your blurb.

Does your lab specialize in clinical informatics? 

Helo us identify what topics/chapters we should cover for the course.

We will give you credit for your contribution. Email cwright2@fredhutch.org with your suggestions.

Would you like to present about a Bioconductor package that you created at the BioC2023 meeting? 

The deadline is March 19, 2023!

Would you like to present about your clinical or genomics tool in an ITN workshop at the AMIA Symposium 2023?

The deadline is March 21, 2023!

Would you like to present about an R package that you created at the POSIT conference? 

The deadline is March 28, 2023!

Let us know if you have a workshop idea for another conference. Imaging conferences coming!

We could potentially offer ITCR participants:

1. Funding

2. Admin support

3. Advice/guidance

4. Possible assistance delivering workshop

Email cwright2@fredhutch.org if you are interested.